TODO

manual
automatic
with/without QC

CV of reps
ICC
min diff
max diff

REPLICATE	NUMBER_FCS_FILES
A_panel1_QC_FALSE	21
A_panel1_QC_TRUE	21
A_panel2_QC_FALSE	15
A_panel2_QC_TRUE	15
B_panel1_QC_FALSE	11
B_panel1_QC_TRUE	11
B_panel2_QC_FALSE	6
B_panel2_QC_TRUE	6
C_panel1_QC_FALSE	17
C_panel1_QC_TRUE	17
C_panel2_QC_FALSE	10
C_panel2_QC_TRUE	10
D_panel1_QC_FALSE	13
D_panel1_QC_TRUE	13
D_panel2_QC_FALSE	7
D_panel2_QC_TRUE	7
E_panel1_QC_FALSE	16
E_panel1_QC_TRUE	16
E_panel2_QC_FALSE	11
E_panel2_QC_TRUE	11
F_panel1_QC_FALSE	24
F_panel1_QC_TRUE	24
F_panel2_QC_FALSE	17
F_panel2_QC_TRUE	17
G_panel1_QC_FALSE	19
G_panel1_QC_TRUE	19
G_panel2_QC_FALSE	12
G_panel2_QC_TRUE	12
H_panel1_QC_FALSE	16
H_panel1_QC_TRUE	16
H_panel2_QC_FALSE	13
H_panel2_QC_TRUE	13

Prop of files with lymph counts > 50K = 0.9709101 Prop of files with lymph counts < 50K = 0.0290899

Total number of Control fcs files (currently) = 228

Total number of Control groups (currently) = 32

Percent of parent CV summary

GROUP	GROUP_MEDIAN_CV	GROUP_MAD_CV
A_panel1_QC_FALSE	12.272625	11.107100
A_panel1_QC_TRUE	12.436942	11.325725
A_panel2_QC_FALSE	28.538720	32.665617
A_panel2_QC_TRUE	18.864053	20.993672
B_panel1_QC_FALSE	13.331114	11.763628
B_panel1_QC_TRUE	9.701616	7.589086
B_panel2_QC_FALSE	20.462495	12.525710
B_panel2_QC_TRUE	20.825569	17.852932
C_panel1_QC_FALSE	13.000531	10.160992
C_panel1_QC_TRUE	13.047864	10.229029
C_panel2_QC_FALSE	13.066676	8.490787
C_panel2_QC_TRUE	11.408774	7.949658
D_panel1_QC_FALSE	22.467768	12.798744
D_panel1_QC_TRUE	22.251881	13.631918
D_panel2_QC_FALSE	24.106595	22.723597
D_panel2_QC_TRUE	22.456713	24.929498
E_panel1_QC_FALSE	25.533634	17.647690
E_panel1_QC_TRUE	25.543367	18.212987
E_panel2_QC_FALSE	13.685761	15.974898
E_panel2_QC_TRUE	14.190213	14.782765
F_panel1_QC_FALSE	20.543881	19.909704
F_panel1_QC_TRUE	20.695217	22.166562
F_panel2_QC_FALSE	18.362233	20.396598
F_panel2_QC_TRUE	14.688611	16.206750
G_panel1_QC_FALSE	14.005662	14.037513
G_panel1_QC_TRUE	13.789122	12.771582
G_panel2_QC_FALSE	19.133298	17.710588
G_panel2_QC_TRUE	17.992290	22.402413
H_panel1_QC_FALSE	14.579431	15.491014
H_panel1_QC_TRUE	14.494121	15.508870
H_panel2_QC_FALSE	29.211024	35.232166
H_panel2_QC_TRUE	26.626490	31.497145

Percent of base population (lymph/PBMC) CV summary

GROUP	GROUP_MEDIAN_CV	GROUP_MAD_CV
A_panel1_QC_FALSE	13.57277	11.934829
A_panel1_QC_TRUE	13.31459	12.239107
A_panel2_QC_FALSE	46.57730	57.204416
A_panel2_QC_TRUE	44.31405	56.224622
B_panel1_QC_FALSE	15.71970	10.153693
B_panel1_QC_TRUE	14.40379	10.024843
B_panel2_QC_FALSE	26.31572	35.680507
B_panel2_QC_TRUE	40.12923	47.780114
C_panel1_QC_FALSE	13.93732	8.238980
C_panel1_QC_TRUE	13.88289	8.225841
C_panel2_QC_FALSE	33.96949	34.041385
C_panel2_QC_TRUE	20.69576	26.506678
D_panel1_QC_FALSE	32.07195	5.371037
D_panel1_QC_TRUE	32.39314	4.717194
D_panel2_QC_FALSE	38.63686	49.272540
D_panel2_QC_TRUE	38.79263	49.441531
E_panel1_QC_FALSE	28.17266	22.784927
E_panel1_QC_TRUE	28.13049	22.737928
E_panel2_QC_FALSE	27.75145	37.136524
E_panel2_QC_TRUE	30.82295	32.735358
F_panel1_QC_FALSE	27.92320	25.322427
F_panel1_QC_TRUE	28.03086	25.306427
F_panel2_QC_FALSE	21.38813	26.820678
F_panel2_QC_TRUE	22.32373	24.866998
G_panel1_QC_FALSE	16.22027	12.756416
G_panel1_QC_TRUE	15.84141	12.125204
G_panel2_QC_FALSE	35.58814	28.654717
G_panel2_QC_TRUE	34.54508	46.149196
H_panel1_QC_FALSE	32.46109	14.221776
H_panel1_QC_TRUE	32.23588	14.591901
H_panel2_QC_FALSE	72.18926	86.660400
H_panel2_QC_TRUE	73.23556	102.525342

Replicate data clustering

## Aggregation function missing: defaulting to length